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# Posts

My thoughts and ideas

Syntax | Griffith Lab

## RNA-seq Bioinformatics

Introduction to bioinformatics for RNA sequence analysis

# Syntax

In this tutorial, created using Jekyll (alembic theme) and Kramdown Flavored Markdown, code blocks display commands necessary to complete the tutorial. Some sections are marked as optional and can be skipped.

A code block will look like this:

sudo apt-get install tree
cd ~
# comment
tree -I workspace/student_tools


All lines contained within the highlighted boxes will need to be executed at the linux command line or an R command prompt (be careful to follow which you should be using). When copy/paste is used, be sure to hit Return or Enter after pasting each command or set of commands. All lines starting with a ‘#’ are comments and will not be interpretted by the shell/R session.

Citation | Griffith Lab

## RNA-seq Bioinformatics

Introduction to bioinformatics for RNA sequence analysis

# Citation

This tutorial is accompanied by a publication. If you find the materials here or in that paper useful, please cite the following: Malachi Griffith*, Jason R. Walker, Nicholas C. Spies, Benjamin J. Ainscough, Obi L. Griffith*. 2015. Informatics for RNA-seq: A web resource for analysis on the cloud. PLoS Comp Biol. 11(8):e1004393. *To whom correspondence should be addressed: E-mail: mgriffit@wustl.edu, obigriffith@wustl.edu

All materials associated with this publication, including high resolution and original figure files, supplementary tables, etc. are available here: https://github.com/griffithlab/rnaseq_tutorial

This includes all figures and supplementary tables.

• ## Citation

This tutorial is accompanied by a publication. If you find the materials here or in that paper useful, please cite...